PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00014.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SRS
Protein Properties Length: 336aa    MW: 37292.8 Da    PI: 6.6192
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00014.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702223.93.2e-691052722154
                   DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel....... 78 
                              r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla+++++++ s+  +++++kr re        
  Rsa1.0_00014.1_g00008.1 105 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSSPSRetQNSNAKRLREVdgndndd 190
                              7899*****************************************************99988776644444445555446777666 PP

                   DUF702  79 ...kskkqsalsstklssaeskkelet.sslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                                 +s    ++ +t++++++s++ le+ ++lP+evss+avfrcvrvss+++  +++e+aYqtav+igGh+fkGiLydqGl+e
  Rsa1.0_00014.1_g00008.1 191 dkdHSGGGGSALATRVVNTNSNSGLEAiQNLPPEVSSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHIFKGILYDQGLDE 272
                              655566667888889999998888775166*******************98535567**********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.4E-64108271IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.8E-28110152IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.7E-26221270IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAGFFYLGGR DNNNKQDHHQ DKSNYLYLYK DEICNTNKGF EIWPPQYFQQ QQQQQQQHVT  60
TPTNFYSFGM IPSGSSSSNN NNNRSRGLYF NVVSDHEPGG FTVTRQGGMN CQDCGNQAKK  120
DCPHMRCRTC CKSRGFHCQT HVKSTWVPAA KRRERLAQLA SLQHHSSPSR ETQNSNAKRL  180
REVDGNDNDD DKDHSGGGGS ALATRVVNTN SNSGLEAIQN LPPEVSSPAV FRCVRVSSIE  240
EDEDDQEYAY QTAVNIGGHI FKGILYDQGL DEDHHHQLNL LASTATTTNA EETAAKTAVT  300
IAGNNNNGLI LDPSSLYPAQ LNSFIAGTPF FTPPRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052670.0GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652439.10.0PREDICTED: protein SHI RELATED SEQUENCE 5-like
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A078IBM80.0A0A078IBM8_BRANA; BnaAnng09150D protein
STRINGBra015837.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-163SHI-related sequence 5